Kazuharu Arakawa : rechercher sur Z-Library

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1

Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API

Kono, Nobuaki, Arakawa, Kazuharu, Ogawa, Ryu, Kido, Nobuhiro, Oshita, Kazuki, Ikegami, Keita, Tamaki, Satoshi, Tomita, Masaru, Aziz, Ramy K.

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 483 KB

english, 2009

2

AMPK activity is required for the induction of anhydrobiosis in a tardigrade Hypsibius exemplaris , and its potential upregulator is PP2A

Kondo, Koyuki, Mori, Masaru, Tomita, Masaru, Arakawa, Kazuharu

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 13.66 MB

english, 2019

3

GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses

Itaya, Hidetoshi, Oshita, Kazuki, Arakawa, Kazuharu, Tomita, Masaru

Journal:

Source Code for Biology and Medicine

Année:

2013

Langue:

english

Fichier:

PDF, 533 KB

english, 2013

4

No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade

Arakawa, Kazuharu

Journal:

Proceedings of the National Academy of Sciences

Année:

2016

Langue:

english

Fichier:

PDF, 509 KB

english, 2016

5

Genome sequencing of a single tardigrade Hypsibius dujardini individual

Arakawa, Kazuharu, Yoshida, Yuki, Tomita, Masaru

Journal:

Scientific Data

Année:

2016

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2016

6

Ultralow Input Genome Sequencing Library Preparation from a Single Tardigrade Specimen

Yoshida, Yuki, Konno, Sayuri, Nishino, Ryousuke, Murai, Yumi, Tomita, Masaru, Arakawa, Kazuharu

Journal:

Journal of Visualized Experiments

Année:

2018

Langue:

english

Fichier:

PDF, 740 KB

english, 2018

7

Comparison of the transcriptomes of two tardigrades with different hatching coordination

Yoshida, Yuki, Sugiura, Kenta, Tomita, Masaru, Matsumoto, Midori, Arakawa, Kazuharu

Journal:

BMC Developmental Biology

Année:

2019

Fichier:

PDF, 1.76 MB

2019

8

Simultaneous Metabarcoding of Eukaryotes and Prokaryotes to Elucidate the Community Structures within Tardigrade Microhabitats

Arakawa, Kazuharu

Journal:

Année:

2020

Langue:

english

Fichier:

PDF, 15.70 MB

english, 2020

9

Preâtreatment with D942, a furancarboxylic acid derivative, increases desiccation tolerance in an anhydrobiotic tardigrade Hypsibius exemplaris

Kondo, Koyuki, Mori, Masaru, Tomita, Masaru, Arakawa, Kazuharu

Journal:

Année:

2020

Fichier:

PDF, 7.34 MB

2020

10

Spider silk self-assembly via modular liquid-liquid phase separation and nanofibrillation

Malay, Ali D., Suzuki, Takehiro, Katashima, Takuya, Kono, Nobuaki, Arakawa, Kazuharu, Numata, Keiji

Journal:

Science Advances

Année:

2020

Fichier:

PDF, 4.02 MB

2020

11

Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes

Nobuaki Kono, Kazuharu Arakawa, Masaru Tomita

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 745 KB

english, 2011

12

A web server for interactive and zoomable Chaos Game Representation images

Kazuharu Arakawa, Kazuki Oshita, Masaru Tomita

Journal:

Source Code for Biology and Medicine

Année:

2009

Langue:

english

Fichier:

PDF, 444 KB

english, 2009

13

KBWS: an EMBOSS associated package for accessing bioinformatics web services

Kazuki Oshita, Kazuharu Arakawa, Masaru Tomita

Journal:

Source Code for Biology and Medicine

Année:

2011

Langue:

english

Fichier:

PDF, 295 KB

english, 2011

14

Genome Projector: zoomable genome map with multiple views

Kazuharu Arakawa, Satoshi Tamaki, Nobuaki Kono, Nobuhiro Kido, Keita Ikegami, Ryu Ogawa, Masaru Tomita

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 2.35 MB

english, 2009

15

GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes

Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yoichi Nakayama, Masaru Tomita

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 525 KB

english, 2006

16

Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index

Kazuharu Arakawa, Haruo Suzuki, Masaru Tomita

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 437 KB

english, 2009

17

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord Hendr

Journal:

Journal of Biomedical Semantics

Année:

2010

Langue:

english

Fichier:

PDF, 530 KB

english, 2010

18

Validating the significance of genomic properties of Chi sites from the distribution of all octamers in Escherichia coli

Kazuharu Arakawa, Reina Uno, Yoichi Nakayama, Masaru Tomita

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 245 KB

english, 2007

19

The orientation bias of Chi sequences is a general tendency of G-rich oligomers

Reina Uno, Yoichi Nakayama, Kazuharu Arakawa, Masaru Tomita

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 857 KB

english, 2000

20

Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics

Satoshi Tamaki, Kazuharu Arakawa, Nobuaki Kono, Masaru Tomita

Journal:

Genomics, Proteomics & Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 131 KB

english, 2007

21

Metabolic Flux Analysis and Visualization †

Toya, Yoshihiro, Kono, Nobuaki, Arakawa, Kazuharu, Tomita, Masaru

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.67 MB

english, 2011

22

On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli

Nozomu Yachie, Kazuharu Arakawa, Masaru Tomita

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 402 KB

english, 2006

23

Noise-reduction filtering for accurate detection of replication termini in bacterial genomes

Kazuharu Arakawa, Rintaro Saito, Masaru Tomita

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 155 KB

english, 2007

24

Analysis of DNA Repair and Protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after Exposure to UVC Radiation

Horikawa, Daiki D., Cumbers, John, Sakakibara, Iori, Rogoff, Dana, Leuko, Stefan, Harnoto, Raechel, Arakawa, Kazuharu, Katayama, Toshiaki, Kunieda, Takekazu, Toyoda, Atsushi, Fujiyama, Asao, Rothschil

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2013

25

Undesigned Selection for Replication Termination of Bacterial Chromosomes

Kono, Nobuaki, Arakawa, Kazuharu, Sato, Mitsuru, Yoshikawa, Hirofumi, Tomita, Masaru, Itaya, Mitsuhiro

Journal:

Journal of Molecular Biology

Année:

2014

Langue:

english

Fichier:

PDF, 738 KB

english, 2014

26

Hybridization between Japanese and North American Chlamydomonas reinhardtii (Volvocales, Chlorophyceae)

Nakada, Takashi, Tsuchida, Yudai, Arakawa, Kazuharu, Ito, Takuro, Tomita, Masaru

Journal:

Phycological Research

Année:

2014

Langue:

english

Fichier:

PDF, 332 KB

english, 2014

27

Comparative Study of Circadian Oscillatory Network Models of Drosophila

Ogawa, Yukino, Arakawa, Kazuharu, Kaizu, Kazunari, Miyoshi, Fumihiko, Nakayama, Yoichi, Tomita, Masaru

Journal:

Artificial Life

Année:

2008

Langue:

english

Fichier:

PDF, 408 KB

english, 2008

28

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

Yoshida, Yuta, Tomiyama, Takuya, Maruta, Takanori, Tomita, Masaru, Ishikawa, Takahiro, Arakawa, Kazuharu

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2016

29

Measures of Compositional Strand Bias Related to Replication Machinery and its Applications

Arakawa, Kazuharu, Tomita, Masaru

Journal:

Current Genomics

Année:

2012

Langue:

english

Fichier:

PDF, 454 KB

english, 2012

30

Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly

Kono, Nobuaki, Nakamura, Hiroyuki, Ito, Yusuke, Tomita, Masaru, Arakawa, Kazuharu

Journal:

Molecular Ecology Resources

Année:

2016

Langue:

english

Fichier:

PDF, 328 KB

english, 2016

31

A Comprehensive Software Suite for the Analysis of cDNAs

Arakawa, Kazuharu, Suzuki, Haruo, Fujishima, Kosuke, Fujimoto, Kenji, Ueda, Sho, Matsui, Motomu, Tomita, Masaru

Journal:

Genomics, Proteomics & Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 541 KB

english, 2005

32

Glucan synthase-like 2 is indispensable for paramylon synthesis in Euglena gracilis

Tanaka, Yuji, Ogawa, Takahisa, Maruta, Takanori, Yoshida, Yuta, Arakawa, Kazuharu, Ishikawa, Takahiro

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 843 KB

english, 2017

33

The GC Skew Index: A Measure of Genomic Compositional Asymmetry and the Degree of Replicational Selection

Arakawa, Kazuharu, Tomita, Masaru

Journal:

Evolutionary Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2007

34

Selection Effects on the Positioning of Genes and Gene Structures from the Interplay of Replication and Transcription in Bacterial Genomes

Arakawa, Kazuharu, Tomita, Masaru

Journal:

Evolutionary Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2007

35

Analysis of repetitive amino acid motifs reveals the essential features of spider dragline silk proteins

Malay, Ali D., Arakawa, Kazuharu, Numata, Keiji, Zou, Quan

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.36 MB

english, 2017

36

Validation of Bacterial Replication Termination Models Using Simulation of Genomic Mutations

Kono, Nobuaki, Arakawa, Kazuharu, Tomita, Masaru, Nieduszynski, Conrad A.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 685 KB

english, 2012

37

Two Novel Heat-Soluble Protein Families Abundantly Expressed in an Anhydrobiotic Tardigrade

Yamaguchi, Ayami, Tanaka, Sae, Yamaguchi, Shiho, Kuwahara, Hirokazu, Takamura, Chizuko, Imajoh-Ohmi, Shinobu, Horikawa, Daiki D., Toyoda, Atsushi, Katayama, Toshiaki, Arakawa, Kazuharu, Fujiyama, Asao

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 808 KB

english, 2012

38

An integrative description of Macrobiotus shonaicus sp. nov. (Tardigrada: Macrobiotidae) from Japan with notes on its phylogenetic position within the hufelandi group

Stec, Daniel, Arakawa, Kazuharu, Michalczyk, Łukasz, Yurchenko, Vyacheslav

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 38.49 MB

english, 2018

39

The complete mitochondrial genome of Echiniscus testudo (Heterotardigrada: Echiniscidae)

Arakawa, Kazuharu

Journal:

Mitochondrial DNA Part B

Année:

2018

Langue:

english

Fichier:

PDF, 721 KB

english, 2018

40

eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria

Kono, Nobuaki, Tomita, Masaru, Arakawa, Kazuharu

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2017

41

The complete mitochondrial genome of Eumeta variegata (Lepidoptera: Psychidae)

Arakawa, Kazuharu, Kono, Nobuaki, Ohtoshi, Rintaro, Nakamura, Hiroyuki, Tomita, Masaru

Journal:

Mitochondrial DNA Part B

Année:

2018

Langue:

english

Fichier:

PDF, 752 KB

english, 2018

42

Accelerated laboratory evolution reveals the influence of replication on the GC skew in Escherichia coli

Kono, Nobuaki, Tomita, Masaru, Arakawa, Kazuharu

Journal:

Genome Biology and Evolution

Année:

2018

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2018

43

Molecular palaeontology illuminates the evolution of ecdysozoan vision

Fleming, James F., Kristensen, Reinhardt Møbjerg, Sørensen, Martin Vinther, Park, Tae-Yoon S., Arakawa, Kazuharu, Blaxter, Mark, Rebecchi, Lorena, Guidetti, Roberto, Williams, Tom A., Roberts, Nichola

Journal:

Proceedings Biological Sciences

Année:

2018

Langue:

english

Fichier:

PDF, 765 KB

english, 2018

44

Complete Genome Sequence of Arthrobacter sp . Strain MN05-02, a UV-Resistant Bacterium from a Manganese Deposit in the Sonoran Desert

Ii, Konosuke Mark, Kono, Nobuaki, Paulino-Lima, Ivan Glaucio, Tomita, Masaru, Rothschild, Lynn Justine, Arakawa, Kazuharu

Journal:

Journal of Genomics

Année:

2019

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2019

45

Complete Genome Sequence of Psychrobacter sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan

Evans-Yamamoto, Daniel, Takeuchi, Nao, Masuda, Takahiro, Murai, Yumi, Onuma, Yasuhide, Mori, Hideto, Masuyama, Nanami, Ishiguro, Soh, Yachie, Nozomu, Arakawa, Kazuharu, Stewart, Frank J.

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 128 KB

english, 2019

46

The bagworm genome reveals a unique fibroin gene that provides high tensile strength

Kono, Nobuaki, Nakamura, Hiroyuki, Ohtoshi, Rintaro, Tomita, Masaru, Numata, Keiji, Arakawa, Kazuharu

Journal:

Communications Biology

Année:

2019

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2019

47

Nanopore sequencing: Review of potential applications in functional genomics

Kono, Nobuaki, Arakawa, Kazuharu

Journal:

Development, Growth & Differentiation

Année:

2019

Langue:

english

Fichier:

PDF, 739 KB

english, 2019

48

Anti-tumor effects and potential therapeutic response biomarkers in α-emitting meta - 211 At-astato-benzylguanidine therapy for malignant pheochromocytoma explored by RNA-sequencing

Ohshima, Yasuhiro, Kono, Nobuaki, Yokota, Yuichiro, Watanabe, Shigeki, Sasaki, Ichiro, Ishioka, Noriko S., Sakashita, Tetsuya, Arakawa, Kazuharu

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2019

49

Complete Genome Sequence of Halomonas olivaria , a Moderately Halophilic Bacterium Isolated from Olive Processing Effluents, Obtained by Nanopore Sequencing

Nagata, Shohei, Ii, Konosuke M., Tsukimi, Tomoya, Miura, Masahiro C., Galipon, Josephine, Arakawa, Kazuharu, Bruno, Vincent

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 176 KB

english, 2019

50

Complete Genome Sequence of Halomonas sulfidaeris Strain Esulfide1 Isolated from a Metal Sulfide Rock at a Depth of 2,200 Meters, Obtained Using Nanopore Sequencing

Saito, Motofumi, Nishigata, Akane, Galipon, Josephine, Arakawa, Kazuharu, Rasko, David

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 130 KB

english, 2019